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Mergeomics
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see Mergeomics.
Integrative network analysis of omics data
Bioconductor version: 3.21
The Mergeomics pipeline serves as a flexible framework for integrating multidimensional omics-disease associations, functional genomics, canonical pathways and gene-gene interaction networks to generate mechanistic hypotheses. It includes two main parts, 1) Marker set enrichment analysis (MSEA); 2) Weighted Key Driver Analysis (wKDA).
Author: Ville-Petteri Makinen, Le Shu, Yuqi Zhao, Zeyneb Kurt, Bin Zhang, Xia Yang
Maintainer: Zeyneb Kurt <zeynebkurt at gmail.com>
citation("Mergeomics")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Mergeomics")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Mergeomics")
Details
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Follow Installation instructions to use this package in your R session.