MDTS
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see MDTS.
Detection of de novo deletion in targeted sequencing trios
Bioconductor version: 3.21
A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.
Author: Jack M.. Fu [aut, cre]
Maintainer: Jack M.. Fu <jmfu at jhsph.edu>
Citation (from within R, enter
citation("MDTS")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MDTS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MDTS")
Reference Manual
PDF
Details
biocViews
Coverage, DataImport, Sequencing, Software, StatisticalMethod, TargetedResequencing, Technology
Version
1.28.0
In Bioconductor since
BioC 3.7 (R-3.5) (7.5 years)
License
Artistic-2.0
Depends
R (>= 3.5.0)
Imports
GenomicAlignments, GenomicRanges, IRanges, Biostrings, DNAcopy, Rsamtools, parallel, stringr
System Requirements
See More
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
MDTS_1.28.0.tar.gz
Windows Binary (x86_64)
MDTS_1.28.0.zip
macOS Binary (x86_64)
MDTS_1.28.0.tgz
macOS Binary (arm64)
MDTS_1.28.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/MDTS
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/MDTS
Bioc Package Browser
https://code.bioconductor.org/browse/MDTS/
Package Short Url
https://bioconductor.org/packages/MDTS/
Package Downloads Report
Download Stats