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GSALightning
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see GSALightning.
Fast Permutation-based Gene Set Analysis
Bioconductor version: 3.21
GSALightning provides a fast implementation of permutation-based gene set analysis for two-sample problem. This package is particularly useful when testing simultaneously a large number of gene sets, or when a large number of permutations is necessary for more accurate p-values estimation.
Author: Billy Heung Wing Chang
Maintainer: Billy Heung Wing Chang <billyheungwing at gmail.com>
citation("GSALightning")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GSALightning")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSALightning")
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Follow Installation instructions to use this package in your R session.