GOTHiC
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see GOTHiC.
Binomial test for Hi-C data analysis
Bioconductor version: 3.21
This is a Hi-C analysis package using a cumulative binomial test to detect interactions between distal genomic loci that have significantly more reads than expected by chance in Hi-C experiments. It takes mapped paired NGS reads as input and gives back the list of significant interactions for a given bin size in the genome.
Author: Borbala Mifsud and Robert Sugar
Maintainer: Borbala Mifsud <b.mifsud at qmul.ac.uk>
citation("GOTHiC")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GOTHiC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOTHiC")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.