EBSEA

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see EBSEA.

Exon Based Strategy for Expression Analysis of genes

Bioconductor version: 3.21

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

Author: Arfa Mehmood, Asta Laiho, Laura L. Elo

Maintainer: Arfa Mehmood <arfa.mehmood at utu.fi>

Citation (from within R, enter citation("EBSEA")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("EBSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EBSEA")

EBSEA HTML R Script

Reference Manual PDF

Version 1.36.0

In Bioconductor since BioC 3.3 (R-3.3) (9.5 years)

License GPL-2

Depends R (>= 4.0.0)

Imports DESeq2, graphics, stats, EmpiricalBrownsMethod

System Requirements

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Suggests knitr, rmarkdown

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Follow Installation instructions to use this package in your R session.

Source Package EBSEA_1.36.0.tar.gz

Windows Binary (x86_64) EBSEA_1.36.0.zip (64-bit only)

macOS Binary (x86_64) EBSEA_1.36.0.tgz

macOS Binary (arm64) EBSEA_1.36.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/EBSEA

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EBSEA

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