ClustAll

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see ClustAll.

ClustAll: Data driven strategy to robustly identify stratification of patients within complex diseases

Bioconductor version: 3.21

Data driven strategy to find hidden groups of patients with complex diseases using clinical data. ClustAll facilitates the unsupervised identification of multiple robust stratifications. ClustAll, is able to overcome the most common limitations found when dealing with clinical data (missing values, correlated data, mixed data types).

Author: Asier Ortega-Legarreta [aut, cre] ORCID iD ORCID: 0009-0000-3563-5362 , Sara Palomino-Echeverria [aut]

Maintainer: Asier Ortega-Legarreta <aortegal at navarra.es>

Citation (from within R, enter citation("ClustAll")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ClustAll")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ClustAll")

ClustALL User's Guide HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, DimensionReduction, PrincipalComponent, Software, StatisticalMethod

Version 1.4.0

In Bioconductor since BioC 3.19 (R-4.4) (1.5 years)

License GPL-2

Depends R (>= 4.2.0)

Imports FactoMineR, bigstatsr, clValid, doSNOW, parallel, foreach, dplyr, fpc, mice, modeest, flock, networkD3, methods, ComplexHeatmap, cluster, RColorBrewer, circlize, grDevices, ggplot2, grid, stats, utils, pbapply

System Requirements

URL

Suggests RUnit, knitr, BiocGenerics, rmarkdown, BiocStyle, roxygen2

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ClustAll_1.4.0.tar.gz

Windows Binary (x86_64) ClustAll_1.4.0.zip

macOS Binary (x86_64) ClustAll_1.4.0.tgz

macOS Binary (arm64) ClustAll_1.4.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ClustAll

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ClustAll

Bioc Package Browser https://code.bioconductor.org/browse/ClustAll/

Package Short Url https://bioconductor.org/packages/ClustAll/

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