CellMapper

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see CellMapper.

Predict genes expressed selectively in specific cell types

Bioconductor version: 3.21

Infers cell type-specific expression based on co-expression similarity with known cell type marker genes. Can make accurate predictions using publicly available expression data, even when a cell type has not been isolated before.

Author: Brad Nelms

Maintainer: Brad Nelms <bnelms.research at gmail.com>

Citation (from within R, enter citation("CellMapper")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CellMapper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CellMapper")

CellMapper Vignette PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GeneExpression, Microarray, Software

Version 1.34.0

In Bioconductor since BioC 3.4 (R-3.3) (9 years)

License Artistic-2.0

Depends S4Vectors, methods

Imports stats, utils

System Requirements

URL

Suggests CellMapperData, Biobase, HumanAffyData, ALL, BiocStyle, ExperimentHub

Linking To

Enhances

Depends On Me CellMapperData

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CellMapper_1.34.0.tar.gz

Windows Binary (x86_64) CellMapper_1.34.0.zip

macOS Binary (x86_64) CellMapper_1.34.0.tgz

macOS Binary (arm64) CellMapper_1.34.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/CellMapper

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CellMapper

Bioc Package Browser https://code.bioconductor.org/browse/CellMapper/

Package Short Url https://bioconductor.org/packages/CellMapper/

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