- Home
- Bioconductor 3.21
- Software Packages
- CTexploreR
CTexploreR
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see CTexploreR.
Explores Cancer Testis Genes
Bioconductor version: 3.21
The CTexploreR package re-defines the list of Cancer Testis/Germline (CT) genes. It is based on publicly available RNAseq databases (GTEx, CCLE and TCGA) and summarises CT genes' main characteristics. Several visualisation functions allow to explore their expression in different types of tissues and cancer cells, or to inspect the methylation status of their promoters in normal tissues.
Author: Axelle Loriot [aut, cre] ORCID iD ORCID: 0000-0002-5288-8561 , Julie Devis [aut] ORCID iD ORCID: 0000-0001-5525-5666 , Anna Diacofotaki [ctb], Charles De Smet [ths], Laurent Gatto [aut, ths] ORCID iD ORCID: 0000-0002-1520-2268
Maintainer: Axelle Loriot <axelle.loriot at uclouvain.be>
citation("CTexploreR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CTexploreR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CTexploreR")
Details
See More
Package Archives
Follow Installation instructions to use this package in your R session.