BioCartaImage

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see BioCartaImage.

BioCarta Pathway Images

Bioconductor version: 3.21

The core functionality of the package is to provide coordinates of genes on the BioCarta pathway images and to provide methods to add self-defined graphics to the genes of interest.

Author: Zuguang Gu [aut, cre] ORCID iD ORCID: 0000-0002-7395-8709

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("BioCartaImage")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BioCartaImage")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioCartaImage")

Customize BioCarta Pathway Images HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BioCarta, Pathways, Software, Visualization

Version 1.6.0

In Bioconductor since BioC 3.18 (R-4.3) (2 years)

License MIT + file LICENSE

Depends R (>= 4.3.0)

Imports magick, grid, stats, grDevices, utils

System Requirements

URL https://github.com/jokergoo/BioCartaImage

Bug Reports https://github.com/jokergoo/BioCartaImage/issues

Suggests testthat, knitr, BiocStyle, ragg

Linking To

Enhances

Depends On Me

Imports Me

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Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BioCartaImage_1.6.0.tar.gz

Windows Binary (x86_64) BioCartaImage_1.6.0.zip

macOS Binary (x86_64) BioCartaImage_1.6.0.tgz

macOS Binary (arm64) BioCartaImage_1.6.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/BioCartaImage

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BioCartaImage

Bioc Package Browser https://code.bioconductor.org/browse/BioCartaImage/

Package Short Url https://bioconductor.org/packages/BioCartaImage/

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