BCRANK

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see BCRANK.

Predicting binding site consensus from ranked DNA sequences

Bioconductor version: 3.21

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur <Adam.Ameur at genpat.uu.se>

Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>

Citation (from within R, enter citation("BCRANK")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BCRANK")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BCRANK")

BCRANK PDF R Script

Reference Manual PDF

Version 1.70.0

In Bioconductor since BioC 2.2 (R-2.7) (17.5 years)

License GPL-2

Depends methods

Imports Biostrings

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Follow Installation instructions to use this package in your R session.

Source Package BCRANK_1.70.0.tar.gz

Windows Binary (x86_64) BCRANK_1.70.0.zip (64-bit only)

macOS Binary (x86_64) BCRANK_1.70.0.tgz

macOS Binary (arm64) BCRANK_1.70.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/BCRANK

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BCRANK

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