Anaquin

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see Anaquin.

Statistical analysis of sequins

Bioconductor version: 3.21

The project is intended to support the use of sequins (synthetic sequencing spike-in controls) owned and made available by the Garvan Institute of Medical Research. The goal is to provide a standard open source library for quantitative analysis, modelling and visualization of spike-in controls.

Author: Ted Wong

Maintainer: Ted Wong <t.wong at garvan.org.au>

Citation (from within R, enter citation("Anaquin")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("Anaquin")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Anaquin")

Anaquin - Vignette PDF R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software

Version 2.32.0

In Bioconductor since BioC 3.4 (R-3.3) (9 years)

License BSD_3_clause + file LICENSE

Depends R (>= 3.3), ggplot2 (>= 2.2.0)

Imports ggplot2, ROCR, knitr, qvalue, locfit, methods, stats, utils, plyr, DESeq2

System Requirements

URL www.sequin.xyz

Bug Reports https://github.com/student-t/RAnaquin/issues

Suggests RUnit, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

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Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Anaquin_2.32.0.tar.gz

Windows Binary (x86_64) Anaquin_2.32.0.zip

macOS Binary (x86_64) Anaquin_2.32.0.tgz

macOS Binary (arm64) Anaquin_2.32.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/Anaquin

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Anaquin

Bioc Package Browser https://code.bioconductor.org/browse/Anaquin/

Package Short Url https://bioconductor.org/packages/Anaquin/

Package Downloads Report Download Stats