AnVILGCP

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see AnVILGCP.

The GCP R Client for the AnVIL

Bioconductor version: 3.21

The package provides a set of functions to interact with the Google Cloud Platform (GCP) services on the AnVIL platform. The package is designed to work with the AnVIL package. User-level interaction with this package should be minimal.

Author: Marcel Ramos [aut, cre] ORCID iD ORCID: 0000-0002-3242-0582 , Nitesh Turaga [aut], Martin Morgan [aut] ORCID iD ORCID: 0000-0002-5874-8148

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("AnVILGCP")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("AnVILGCP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVILGCP")

Working with AnVIL on GCP HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Infrastructure, Software, ThirdPartyClient

Version 1.2.0

In Bioconductor since BioC 3.20 (R-4.4) (1 year)

License Artistic-2.0

Depends R (>= 4.2.0)

Imports AnVILBase, BiocBaseUtils, dplyr, httr, jsonlite, methods, rlang, stats, tibble, tidyr, utils

System Requirements gsutil, gcloud

URL https://github.com/Bioconductor/AnVILGCP

Bug Reports https://github.com/Bioconductor/AnVILGCP/issues

Suggests AnVIL, BiocStyle, knitr, rmarkdown, testthat, withr

Linking To

Enhances

Depends On Me AnVILWorkflow, terraTCGAdata

Imports Me AnVILPublish

Suggests Me AnVIL, AnVILBase

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AnVILGCP_1.2.0.tar.gz

Windows Binary (x86_64) AnVILGCP_1.2.0.zip

macOS Binary (x86_64) AnVILGCP_1.2.0.tgz

macOS Binary (arm64) AnVILGCP_1.2.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/AnVILGCP

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AnVILGCP

Bioc Package Browser https://code.bioconductor.org/browse/AnVILGCP/

Package Short Url https://bioconductor.org/packages/AnVILGCP/

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