ARRmNormalization

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see ARRmNormalization.

Adaptive Robust Regression normalization for Illumina methylation data

Bioconductor version: 3.21

Perform the Adaptive Robust Regression method (ARRm) for the normalization of methylation data from the Illumina Infinium HumanMethylation 450k assay.

Author: Jean-Philippe Fortin, Celia M.T. Greenwood, Aurelie Labbe.

Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>

Citation (from within R, enter citation("ARRmNormalization")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ARRmNormalization")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ARRmNormalization")

ARRmNormalization PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DNAMethylation, Microarray, Preprocessing, Software, TwoChannel

Version 1.48.0

In Bioconductor since BioC 2.12 (R-3.0) (12.5 years)

License Artistic-2.0

Depends R (>= 2.15.1), ARRmData

Imports

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ARRmNormalization_1.48.0.tar.gz

Windows Binary (x86_64) ARRmNormalization_1.48.0.zip

macOS Binary (x86_64) ARRmNormalization_1.48.0.tgz

macOS Binary (arm64) ARRmNormalization_1.48.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ARRmNormalization

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ARRmNormalization

Bioc Package Browser https://code.bioconductor.org/browse/ARRmNormalization/

Package Short Url https://bioconductor.org/packages/ARRmNormalization/

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