switchde

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see switchde.

Switch-like differential expression across single-cell trajectories

Bioconductor version: 3.20

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

Author: Kieran Campbell [aut, cre]

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Citation (from within R, enter citation("switchde")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("switchde")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("switchde")

An overview of the switchde package HTML R Script

Reference Manual PDF

NEWS Text

Version 1.32.0

In Bioconductor since BioC 3.4 (R-3.3) (8.5 years)

License GPL (>= 2)

Depends R (>= 3.4), SingleCellExperiment

Imports SummarizedExperiment, dplyr, ggplot2, methods, stats

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Follow Installation instructions to use this package in your R session.

Source Package switchde_1.32.0.tar.gz

Windows Binary (x86_64) switchde_1.32.0.zip (64-bit only)

macOS Binary (x86_64) switchde_1.32.0.tgz

macOS Binary (arm64) switchde_1.32.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/switchde

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/switchde

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