planet

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see planet.

Placental DNA methylation analysis tools

Bioconductor version: 3.20

This package contains R functions to predict biological variables to from placnetal DNA methylation data generated from infinium arrays. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data.

Author: Victor Yuan [aut, cre], Wendy P. Robinson [ctb]

Maintainer: Victor Yuan <victor.2wy at gmail.com>

Citation (from within R, enter citation("planet")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("planet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("planet")

planet HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CpGIsland, DNAMethylation, DifferentialMethylation, Epigenetics, MethylationArray, Microarray, Software

Version 1.14.0

In Bioconductor since BioC 3.13 (R-4.1) (4 years)

License GPL-2

Depends R (>= 4.3)

Imports methods, tibble, magrittr, dplyr

System Requirements

URL https://victor.rbind.io/planet http://github.com/wvictor14/planet

Bug Reports http://github.com/wvictor14/planet/issues

Suggests ggplot2, testthat, tidyr, scales, minfi, EpiDISH, knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me methylclock

Suggests Me eoPredData

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package planet_1.14.0.tar.gz

Windows Binary (x86_64) planet_1.14.0.zip

macOS Binary (x86_64) planet_1.14.0.tgz

macOS Binary (arm64) planet_1.14.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/planet

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/planet

Bioc Package Browser https://code.bioconductor.org/browse/planet/

Package Short Url https://bioconductor.org/packages/planet/

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