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phenopath
This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see phenopath.
Genomic trajectories with heterogeneous genetic and environmental backgrounds
Bioconductor version: 3.20
PhenoPath infers genomic trajectories (pseudotimes) in the presence of heterogeneous genetic and environmental backgrounds and tests for interactions between them.
Author: Kieran Campbell
Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>
Citation (from within R, enter
citation("phenopath")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("phenopath")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("phenopath") Reference Manual
PDF
Details
biocViews
Bayesian, GeneExpression, ImmunoOncology, PrincipalComponent, RNASeq, SingleCell, Software
Version
1.30.0
In Bioconductor since
BioC 3.6 (R-3.4) (7.5 years)
License
Apache License (== 2.0)
Depends
System Requirements
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Follow Installation instructions to use this package in your R session.
Source Package
phenopath_1.30.0.tar.gz
Windows Binary (x86_64)
phenopath_1.30.0.zip
macOS Binary (x86_64)
phenopath_1.30.0.tgz
macOS Binary (arm64)
phenopath_1.30.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/phenopath
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/phenopath
Bioc Package Browser
https://code.bioconductor.org/browse/phenopath/
Package Short Url
https://bioconductor.org/packages/phenopath/
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