panelcn.mops

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see panelcn.mops.

CNV detection tool for targeted NGS panel data

Bioconductor version: 3.20

CNV detection tool for targeted NGS panel data. Extension of the cn.mops package.

Author: Verena Haunschmid [aut], Gundula Povysil [aut, cre]

Maintainer: Gundula Povysil <povysil at bioinf.jku.at>

Citation (from within R, enter citation("panelcn.mops")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("panelcn.mops")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("panelcn.mops")

panelcn.mops: Manual for the R package PDF R Script

Reference Manual PDF

NEWS Text

Version 1.28.0

In Bioconductor since BioC 3.6 (R-3.4) (7.5 years)

License LGPL (>= 2.0)

Depends R (>= 3.5.0), cn.mops, methods, utils, stats, graphics

System Requirements

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Follow Installation instructions to use this package in your R session.

Windows Binary (x86_64) panelcn.mops_1.28.0.zip

macOS Binary (x86_64) panelcn.mops_1.28.0.tgz

macOS Binary (arm64) panelcn.mops_1.28.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/panelcn.mops

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/panelcn.mops

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