hca
This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see hca.
Exploring the Human Cell Atlas Data Coordinating Platform
DOI: 10.18129/B9.bioc.hca
Bioconductor version: 3.20
This package provides users with the ability to query the Human Cell Atlas data repository for single-cell experiment data. The `projects()`, `files()`, `samples()` and `bundles()` functions retrieve summary information on each of these indexes; corresponding `*_details()` are available for individual entries of each index. File-based resources can be downloaded using `files_download()`. Advanced use of the package allows the user to page through large result sets, and to flexibly query the 'list-of-lists' structure representing query responses.
Author: Maya McDaniel [aut], Martin Morgan [aut, cre] ORCID iD ORCID: 0000-0002-5874-8148 , Kayla Interdonato [ctb]
Maintainer: Martin Morgan <martin.morgan at roswellpark.org>
citation("hca")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("hca")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("hca")
Details
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Follow Installation instructions to use this package in your R session.