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GateFinder
This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see GateFinder.
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry
Bioconductor version: 3.20
Given a vector of cluster memberships for a cell population, identifies a sequence of gates (polygon filters on 2D scatter plots) for isolation of that cell type.
Author: Nima Aghaeepour <naghaeep at gmail.com>, Erin F. Simonds <erin.simonds at gmail.com>
Maintainer: Nima Aghaeepour <naghaeep at gmail.com>
citation("GateFinder")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GateFinder")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GateFinder")
Details
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Follow Installation instructions to use this package in your R session.