Dune

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see Dune.

Improving replicability in single-cell RNA-Seq cell type discovery

Bioconductor version: 3.20

Given a set of clustering labels, Dune merges pairs of clusters to increase mean ARI between labels, improving replicability.

Author: Hector Roux de Bezieux [aut, cre] ORCID iD ORCID: 0000-0002-1489-8339 , Kelly Street [aut]

Maintainer: Hector Roux de Bezieux <hector.rouxdebezieux at berkeley.edu>

Citation (from within R, enter citation("Dune")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("Dune")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Dune")

Dune Vignette HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Version 1.18.0

In Bioconductor since BioC 3.11 (R-4.0) (5 years)

License MIT + file LICENSE

Depends R (>= 3.6)

System Requirements

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Suggests knitr, rmarkdown, testthat (>= 2.1.0)

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Follow Installation instructions to use this package in your R session.

Source Package Dune_1.18.0.tar.gz

Windows Binary (x86_64) Dune_1.18.0.zip

macOS Binary (x86_64) Dune_1.18.0.tgz

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/Dune

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Dune

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