CardinalIO

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see CardinalIO.

Read and write mass spectrometry imaging files

Bioconductor version: 3.20

Fast and efficient reading and writing of mass spectrometry imaging data files. Supports imzML and Analyze 7.5 formats. Provides ontologies for mass spectrometry imaging.

Author: Kylie Ariel Bemis [aut, cre]

Maintainer: Kylie Ariel Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("CardinalIO")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CardinalIO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CardinalIO")

Parsing and writing imzML files HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, ImagingMassSpectrometry, Infrastructure, MassSpectrometry, Software

Version 1.4.0

In Bioconductor since BioC 3.18 (R-4.3) (1.5 years)

License Artistic-2.0 | file LICENSE

Depends R (>= 4.4), BiocParallel, matter, ontologyIndex

Imports methods, S4Vectors, stats, utils, tools

System Requirements

URL http://www.cardinalmsi.org

Bug Reports https://github.com/kuwisdelu/CardinalIO/issues

Suggests BiocStyle, testthat, knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me Cardinal

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CardinalIO_1.4.0.tar.gz

Windows Binary (x86_64) CardinalIO_1.4.0.zip (64-bit only)

macOS Binary (x86_64) CardinalIO_1.4.0.tgz

macOS Binary (arm64) CardinalIO_1.4.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/CardinalIO

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CardinalIO

Bioc Package Browser https://code.bioconductor.org/browse/CardinalIO/

Package Short Url https://bioconductor.org/packages/CardinalIO/

Package Downloads Report Download Stats