To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("simpleaffy")

In most cases, you don't need to download the package archive at all.

simpleaffy

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see simpleaffy.

Very simple high level analysis of Affymetrix data

Bioconductor version: 3.2

Provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as t-tests, fold changes and the like. Makes heavy use of the affy library. Also has some basic scatter plot functions and mechanisms for generating high resolution journal figures...

Author: Crispin J Miller

Maintainer: Crispin Miller <cmiller at picr.man.ac.uk>

Citation (from within R, enter citation("simpleaffy")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("simpleaffy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("simpleaffy")
PDF simpleaffy primer
PDF Reference Manual
Text README

Details

biocViews Annotation, DataImport, DifferentialExpression, Microarray, OneChannel, Preprocessing, QualityControl, ReportWriting, Software, Transcription, Visualization
Version 2.46.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License GPL (>= 2)
Depends R (>= 2.0.0), methods, utils, grDevices, graphics, stats, BiocGenerics(>= 0.1.12), Biobase, affy(>= 1.33.6), genefilter, gcrma
Imports methods, utils, grDevices, graphics, stats, BiocGenerics, Biobase, affy, genefilter, gcrma
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.bioconductor.org http://bioinformatics.picr.man.ac.uk/simpleaffy/
Depends On Me yaqcaffy
Imports Me affyQCReport, arrayMvout
Suggests Me AffyExpress, ArrayTools, ELBOW
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source simpleaffy_2.46.0.tar.gz
Windows Binary simpleaffy_2.46.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) simpleaffy_2.46.0.tgz
Mac OS X 10.9 (Mavericks) simpleaffy_2.46.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/simpleaffy/tree/release-3.2
Package Short Url http://bioconductor.org/packages/simpleaffy/
Package Downloads Report Download Stats

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