To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("similaRpeak")

In most cases, you don't need to download the package archive at all.

similaRpeak

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see similaRpeak.

similaRpeak: Metrics to estimate a level of similarity between two ChIP-Seq profiles

Bioconductor version: 3.2

This package calculates metrics which assign a level of similarity between ChIP-Seq profiles.

Author: Astrid Deschenes [cre, aut], Elsa Bernatchez [aut], Charles Joly Beauparlant [aut], Fabien Claude Lamaze [aut], Rawane Samb [aut], Pascal Belleau [aut], Arnaud Droit [aut]

Maintainer: Astrid Louise Deschenes <Astrid-Louise.Deschenes at crchudequebec.ulaval.ca>

Citation (from within R, enter citation("similaRpeak")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("similaRpeak")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("similaRpeak")
HTML similaRpeak: similarity between two ChIP-Seq profiles
PDF Reference Manual
Text NEWS
Text LICENSE

Details

biocViews BiologicalQuestion, ChIPSeq, DifferentialExpression, Genetics, MultipleComparison, Software
Version 1.2.0
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License Artistic-2.0 | file LICENSE
Depends R6 (>= 2.0)
Imports rtracklayer, GenomicAlignments, Rsamtools
LinkingTo
Suggests RUnit, BiocGenerics, knitr
SystemRequirements
Enhances
URL https://github.com/adeschen/similaRpeak
BugReports https://github.com/adeschen/similaRpeak/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source similaRpeak_1.2.0.tar.gz
Windows Binary similaRpeak_1.2.0.zip
Mac OS X 10.6 (Snow Leopard) similaRpeak_1.2.0.tgz
Mac OS X 10.9 (Mavericks) similaRpeak_1.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/similaRpeak/tree/release-3.2
Package Short Url http://bioconductor.org/packages/similaRpeak/
Package Downloads Report Download Stats

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