To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rTRMui")

In most cases, you don't need to download the package archive at all.

rTRMui

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see rTRMui.

A shiny user interface for rTRM

Bioconductor version: 3.2

This package provides a web interface to compute transcriptional regulatory modules with rTRM.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("rTRMui")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rTRMui")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("rTRMui")
PDF Introduction to rTRMui
PDF Reference Manual
Text NEWS

Details

biocViews GUI, GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version 1.8.0
In Bioconductor since BioC 2.13 (R-3.0) (2.5 years)
License GPL-3
Depends
Imports shiny (>= 0.9), rTRM, MotifDb, org.Hs.eg.db, org.Mm.eg.db
LinkingTo
Suggests
SystemRequirements
Enhances
URL https://github.com/ddiez/rTRMui
BugReports https://github.com/ddiez/rTRMui/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source rTRMui_1.8.0.tar.gz
Windows Binary rTRMui_1.8.0.zip
Mac OS X 10.6 (Snow Leopard) rTRMui_1.8.0.tgz
Mac OS X 10.9 (Mavericks) rTRMui_1.8.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/rTRMui/tree/release-3.2
Package Short Url http://bioconductor.org/packages/rTRMui/
Package Downloads Report Download Stats

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