To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iCheck")

In most cases, you don't need to download the package archive at all.

iCheck

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see iCheck.

QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data

Bioconductor version: 3.2

QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.

Author: Weiliang Qiu <stwxq at channing.harvard.edu>, Brandon Guo <brandowonder at gmail.com> Christopher Anderson <christopheranderson84 at gmail.com>, Barbara Klanderman <BKLANDERMAN at partners.org>, Vincent Carey <stvjc at channing.harvard.edu>, Benjamin Raby <rebar at channing.harvard.edu>

Maintainer: Weiliang Qiu <stwxq at channing.harvard.edu>

Citation (from within R, enter citation("iCheck")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iCheck")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("iCheck")
PDF iCheck
PDF Reference Manual
Text NEWS

Details

biocViews DNAMethylation, DifferentialExpression, GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software, TwoChannel
Version 1.0.0
In Bioconductor since BioC 3.2 (R-3.2) (0.5 years)
License GPL (>= 2)
Depends R (>= 3.2.0), Biobase, lumi, gplots
Imports stats, graphics, preprocessCore, grDevices, randomForest, affy, limma, parallel, vsn, GeneSelectMMD, rgl, MASS, lmtest, scatterplot3d
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source iCheck_1.0.0.tar.gz
Windows Binary iCheck_1.0.0.zip
Mac OS X 10.6 (Snow Leopard) iCheck_1.0.0.tgz
Mac OS X 10.9 (Mavericks) iCheck_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/iCheck/tree/release-3.2
Package Short Url http://bioconductor.org/packages/iCheck/
Package Downloads Report Download Stats

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