To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("exomeCopy")
In most cases, you don't need to download the package archive at all.
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see exomeCopy.
Bioconductor version: 3.2
Detection of copy number variants (CNV) from exome sequencing samples, including unpaired samples. The package implements a hidden Markov model which uses positional covariates, such as background read depth and GC-content, to simultaneously normalize and segment the samples into regions of constant copy count.
Author: Michael Love
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
Citation (from within R,
enter citation("exomeCopy")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("exomeCopy")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("exomeCopy")
Follow Installation instructions to use this package in your R session.
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: