To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TSSi")

In most cases, you don't need to download the package archive at all.

TSSi

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see TSSi.

Transcription Start Site Identification

Bioconductor version: 3.2

Identify and normalize transcription start sites in high-throughput sequencing data.

Author: Julian Gehring, Clemens Kreutz

Maintainer: Julian Gehring <jg-bico at gmx.com>

Citation (from within R, enter citation("TSSi")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TSSi")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("TSSi")
PDF Introduction to the TSSi package: Identification of Transcription Start Sites
PDF Reference Manual

Details

biocViews Genetics, Preprocessing, RNASeq, Sequencing, Software
Version 1.16.2
In Bioconductor since BioC 2.9 (R-2.14) (4.5 years)
License GPL-3
Depends R (>= 2.13.2)
Imports methods, BiocGenerics(>= 0.3.2), S4Vectors, Hmisc, minqa, stats, Biobase(>= 0.3.2), plyr, IRanges
LinkingTo
Suggests rtracklayer
SystemRequirements
Enhances parallel
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source TSSi_1.16.2.tar.gz
Windows Binary TSSi_1.16.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) TSSi_1.16.0.tgz
Mac OS X 10.9 (Mavericks) TSSi_1.16.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/TSSi/tree/release-3.2
Package Short Url http://bioconductor.org/packages/TSSi/
Package Downloads Report Download Stats

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