To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RedeR")

In most cases, you don't need to download the package archive at all.

RedeR

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see RedeR.

Interactive visualization and manipulation of nested networks

Bioconductor version: 3.2

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

Citation (from within R, enter citation("RedeR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RedeR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RedeR")
PDF Main vignette: interactive visualization and manipulation of nested networks
PDF Reference Manual
Text NEWS

Details

Version 1.18.1
In Bioconductor since BioC 2.9 (R-2.14) (4.5 years)
License GPL (>= 2)
Depends R (>= 2.15), methods, igraph
Imports RCurl, XML, pvclust
LinkingTo
Suggests PANR
SystemRequirements Java Runtime Environment (>= 6)
Enhances
Depends On Me Fletcher2013b
Imports Me Mulder2012, PANR, RTN
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RedeR_1.18.1.tar.gz
Windows Binary RedeR_1.18.1.zip
Mac OS X 10.6 (Snow Leopard) RedeR_1.18.0.tgz
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

AltStyle によって変換されたページ (->オリジナル) /