To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSstats")

In most cases, you don't need to download the package archive at all.

MSstats

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see MSstats.

Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

Bioconductor version: 3.2

A set of tools for statistical relative protein significance analysis in DDA, SRM and DIA experiments.

Author: Meena Choi <mnchoi67 at gmail.com>, Lin-Yang Cheng <cheng68 at purdue.edu>, Tsung-Heng Tsai <tsai.tsungheng at gmail.com>, Olga Vitek <o.vitek at neu.edu>

Maintainer: Meena Choi <mnchoi67 at gmail.com>

Citation (from within R, enter citation("MSstats")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSstats")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("MSstats")
PDF MSstats-manual.pdf
PDF Reference Manual
Text NEWS

Details

biocViews Software
Version 3.2.1
In Bioconductor since BioC 2.13 (R-3.0) (2.5 years)
License Artistic-2.0
Depends R (>= 3.2), ggplot2 (>= 2.0.0), Rcpp, grid, reshape2
Imports lme4, marray, limma, gplots, ggrepel, preprocessCore, data.table, MSnbase, reshape, survival
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://msstats.org
BugReports https://groups.google.com/forum/#!forum/msstats
Depends On Me
Imports Me
Suggests Me SWATH2stats
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MSstats_3.2.1.tar.gz
Windows Binary MSstats_3.2.1.zip
Mac OS X 10.6 (Snow Leopard) MSstats_3.2.0.tgz
Mac OS X 10.9 (Mavericks) MSstats_3.2.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/MSstats/tree/release-3.2
Package Short Url http://bioconductor.org/packages/MSstats/
Package Downloads Report Download Stats

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