To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AtlasRDF")
In most cases, you don't need to download the package archive at all.
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see AtlasRDF.
Bioconductor version: 3.2
Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.
Author: James Malone, Simon Jupp, Maryam Soleimani
Maintainer: James Malone <malone at ebi.ac.uk>
Citation (from within R,
enter citation("AtlasRDF")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AtlasRDF")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AtlasRDF")
Follow Installation instructions to use this package in your R session.
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