gpaExample

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see gpaExample.

Example data for the GPA package (Genetic analysis incorporating Pleiotropy and Annotation)

Bioconductor version: 3.19

Example data for the GPA package, consisting of the p-values of 1,219,805 SNPs for five psychiatric disorder GWAS from the psychiatric GWAS consortium (PGC), with the annotation data using genes preferentially expressed in the central nervous system (CNS).

Author: Dongjun Chung, Carter Allen

Maintainer: Dongjun Chung <dongjun.chung at gmail.com>

Citation (from within R, enter citation("gpaExample")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("gpaExample")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, Homo_sapiens_Data, SNPData

Version 1.16.0

License GPL (>= 2)

Depends R (>= 4.0.0)

Imports

System Requirements

URL http://dongjunchung.github.io/GPA/

Suggests

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me GPA

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gpaExample_1.16.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/gpaExample

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gpaExample

Package Short Url https://bioconductor.org/packages/gpaExample/

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