curatedOvarianData

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see curatedOvarianData.

Clinically Annotated Data for the Ovarian Cancer Transcriptome

DOI: 10.18129/B9.bioc.curatedOvarianData

Bioconductor version: 3.19

The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer.

Author: Benjamin F. Ganzfried, Markus Riester, Steve Skates, Victoria Wang, Thomas Risch, Benjamin Haibe-Kains, Svitlana Tyekucheva, Jie Ding, Ina Jazic, Michael Birrer, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron

Maintainer: Levi Waldron <lwaldron.research at gmail.com>

Citation (from within R, enter citation("curatedOvarianData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("curatedOvarianData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedOvarianData")

curatedOvarianData_vignette.pdf PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CancerData, ExperimentData, MicroarrayData, OvarianCancerData, RNASeqData

Version 1.42.0

License Artistic-2.0

Depends R (>= 3.0.0), Biobase

Imports BiocGenerics

System Requirements

URL http://bcb.dfci.harvard.edu/ovariancancer

Suggests survival, RUnit, metafor, genefilter, logging, sva, xtable, futile.logger, BiocStyle

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Depends On Me

Imports Me

Suggests Me TOP, doppelgangR

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package curatedOvarianData_1.42.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/curatedOvarianData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/curatedOvarianData

Package Short Url https://bioconductor.org/packages/curatedOvarianData/

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