curatedAdipoRNA

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see curatedAdipoRNA.

A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Bioconductor version: 3.19

A curated dataset of RNA-Seq samples. The samples are MDI-induced pre-phagocytes (3T3-L1) at different time points/stage of differentiation. The package document the data collection, pre-processing and processing. In addition to the documentation, the package contains the scripts that was used to generated the data.

Author: Mahmoud Ahmed [aut, cre]

Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>

Citation (from within R, enter citation("curatedAdipoRNA")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("curatedAdipoRNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedAdipoRNA")

Using curatedAdipoRNA HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, GEO, RNASeqData, SequencingData

Version 1.20.0

License GPL-3

Depends R (>= 3.6), SummarizedExperiment

Imports

System Requirements

URL https://github.com/MahShaaban/curatedAdipoRNA

Bug Reports https://github.com/MahShaaban/curatedAdipoRNA/issues

Suggests knitr, rmarkdown, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2, S4Vectors

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package curatedAdipoRNA_1.20.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/curatedAdipoRNA

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/curatedAdipoRNA

Package Short Url https://bioconductor.org/packages/curatedAdipoRNA/

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