bcellViper

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see bcellViper.

Human B-cell transcriptional interactome and normal human B-cell expression data

Bioconductor version: 3.19

This package provides a human B-cell context-specific transcriptional regulatory network and a human normal B-cells dataset for the examples in package viper.

Author: Mariano Javier Alvarez

Maintainer: Mariano Javier Alvarez <malvarez at c2b2.columbia.edu>

Citation (from within R, enter citation("bcellViper")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("bcellViper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bcellViper")

Using bcellViper PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CancerData, ExperimentData, Genome, Homo_sapiens_Data

Version 1.40.0

License GPL (>=2)

Depends R (>= 2.14.0), Biobase, methods

Imports

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me

Imports Me dorothea

Suggests Me GenomicSuperSignature, pageRank, viper

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bcellViper_1.40.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/bcellViper

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bcellViper

Package Short Url https://bioconductor.org/packages/bcellViper/

Package Downloads Report Download Stats