VariantToolsData

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see VariantToolsData.

Data for the VariantTools tutorial

Bioconductor version: 3.19

Data from the sequencing of a 50/50 mixture of HapMap trio samples NA12878 (CEU) and NA19240 (YRI), subset to the TP53 region.

Author: Michael Lawrence

Maintainer: Michael Lawrence <michafla at gene.com>

Citation (from within R, enter citation("VariantToolsData")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("VariantToolsData")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("VariantToolsData")

VariantTools Example Data PDF R Script

Reference Manual PDF

Version 1.28.0

License Artistic-2.0

Depends R (>= 3.5.0), VariantAnnotation(>= 1.7.35)

System Requirements

URL

Suggests VariantTools(>= 1.3.4), gmapR(>= 1.3.3), BiocStyle

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Follow Installation instructions to use this package in your R session.

Windows Binary (x86_64)

macOS Binary (x86_64)

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Source Repository git clone https://git.bioconductor.org/packages/VariantToolsData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/VariantToolsData

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