TransOmicsData

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see TransOmicsData.

A collection of trans-omics datasets across various biological systems

Bioconductor version: 3.19

Contains a collection of trans-omics datasets generated using various sequencing technologies such as RNA-seq, Mass spectrometry and ChIP-seq. Modalities include the bulk profiling of the phosphoproteome, proteome, transcriptome and epigenome. Data reflects the timecourses of different developmental systems from the mouse or human.

Author: Carissa Chen [aut] , Di Xiao [aut, cre] , Pengyi Yang [aut]

Maintainer: Di Xiao <d.xiao at sydney.edu.au>

Citation (from within R, enter citation("TransOmicsData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("TransOmicsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TransOmicsData")

TransOmicsData: A collection of trans-omics datasets across various biological systems HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ChIPSeqData, ExperimentData, ExperimentHub, MassSpectrometryData, RNASeqData, SequencingData, Tissue

Version 1.0.1

License GPL-3 + file LICENSE

Depends

Imports S4Vectors, utils

System Requirements

URL https://github.com/PYangLab/TransOmicsData

Bug Reports https://support.bioconductor.org/t/TransOmicsData

Suggests BiocStyle, knitr, rmarkdown, RefManageR, sessioninfo, testthat, ExperimentHub

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TransOmicsData_1.0.1.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/TransOmicsData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TransOmicsData

Package Short Url https://bioconductor.org/packages/TransOmicsData/

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