TENxVisiumData

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see TENxVisiumData.

Visium spatial gene expression data by 10X Genomics

Bioconductor version: 3.19

Collection of Visium spatial gene expression datasets by 10X Genomics, formatted into objects of class SpatialExperiment. Data cover various organisms and tissues, and include: single- and multi-section experiments, as well as single sections subjected to both whole transcriptome and targeted panel analysis. Datasets may be used for testing of and as examples in packages, for tutorials and workflow demonstrations, or similar purposes.

Author: Helena L. Crowell [aut, cre]

Maintainer: Helena L. Crowell <helena at crowell.eu>

Citation (from within R, enter citation("TENxVisiumData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("TENxVisiumData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxVisiumData")

TENxVisiumData HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch

Version 1.12.0

License MIT + file LICENSE

Depends ExperimentHub, SpatialExperiment

Imports utils

System Requirements

URL https://github.com/helenalc/TENxVisiumData

Bug Reports https://github.com/helenalc/TENxVisiumData/issues

Suggests BiocStyle, knitr, rmarkdown

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TENxVisiumData_1.12.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/TENxVisiumData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TENxVisiumData

Package Short Url https://bioconductor.org/packages/TENxVisiumData/

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