TENxBUSData

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see TENxBUSData.

Single cell dataset from 10x in BUS format

Bioconductor version: 3.19

Download Barcode, UMI, and Set (BUS) format of 10x datasets from within R. This package accompanies the package BUSpaRse, which can load BUS format into R as a sparse matrix, and which has utility functions related to using the C++ command line package bustools.

Author: Lambda Moses [aut, cre]

Maintainer: Lambda Moses <dlu2 at caltech.edu>

Citation (from within R, enter citation("TENxBUSData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("TENxBUSData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxBUSData")

Downloading BUS data HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, SequencingData, SingleCellData

Version 1.18.0

License BSD_2_clause + file LICENSE

Depends

Imports ExperimentHub, AnnotationHub, utils, BiocGenerics

System Requirements

URL https://github.com/BUStools/TENxBUSData

Bug Reports https://github.com/BUStools/TENxBUSData/issues

Suggests knitr, rmarkdown, BiocStyle

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me BUSpaRse

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TENxBUSData_1.18.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/TENxBUSData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TENxBUSData

Package Short Url https://bioconductor.org/packages/TENxBUSData/

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