CoSIAdata

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see CoSIAdata.

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

DOI: 10.18129/B9.bioc.CoSIAdata

Bioconductor version: 3.19

Variance Stabilized Transformation of Read Counts derived from Bgee RNA-Seq Expression Data. Expression Data includes annotations and is across 6 species (Homo sapiens, Mus musculus, Rattus norvegicus, Danio rerio, Drosophila melanogaster, and Caenorhabditis elegans) and across more than 132 tissues. The data is represented as a RData files and is available in ExperimentHub.

Author: Anisha Haldar [aut] , Vishal H. Oza [aut] , Amanda D. Clark [cre, aut] , Nathaniel S. DeVoss [aut] , Brittany N. Lasseigne [aut]

Maintainer: Amanda D. Clark <amanda at freshairfamily.org>

Citation (from within R, enter citation("CoSIAdata")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CoSIAdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CoSIAdata")

CoSIAdata HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Caenorhabditis_elegans_Data, Danio_rerio_Data, Drosophila_melanogaster_Data, ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, OrganismData, PackageTypeData, RNASeqData, Rattus_norvegicus_Data, SequencingData, Tissue

Version 1.4.1

License MIT + file LICENSE

Depends R (>= 4.3.0), ExperimentHub(>= 2.6.0)

Imports

System Requirements

URL

Bug Reports https://github.com/lasseignelab/CoSIAdata/issues

Suggests BiocStyle(>= 2.26.0), utils (>= 4.3.0), AnnotationHub(>= 3.7.3), knitr (>= 1.42)

Linking To

Enhances

Depends On Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CoSIAdata_1.4.1.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/CoSIAdata

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CoSIAdata

Package Short Url https://bioconductor.org/packages/CoSIAdata/

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