ChIPexoQualExample

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see ChIPexoQualExample.

Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data

DOI: 10.18129/B9.bioc.ChIPexoQualExample

Bioconductor version: 3.19

Data for the ChIPexoQual package, consisting of (3) chromosome 1 aligned reads from a ChIP-exo experiment for FoxA1 in mouse liver cell lines aligned to the mm9 genome.

Author: Rene Welch, Dongjun Chung, Sunduz Keles

Maintainer: Rene Welch <welch at stat.wisc.edu>

Citation (from within R, enter citation("ChIPexoQualExample")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ChIPexoQualExample")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPexoQualExample")

ChIPexoQualExample HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, Genome

Version 1.28.0

License GPL (>= 2)

Depends R (>= 3.3)

Imports

System Requirements

URL http://www.github.com/keleslab/ChIPexoQualExample

Suggests BiocStyle, knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me ChIPexoQual

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ChIPexoQualExample_1.28.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/ChIPexoQualExample

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ChIPexoQualExample

Package Short Url https://bioconductor.org/packages/ChIPexoQualExample/

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