BioImageDbs

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see BioImageDbs.

Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub)

Bioconductor version: 3.19

The package provides a bioimage dataset for the image analysis using machine learning and deep learning. The dataset includes microscopy imaging data with supervised labels. The data is provided as R list data that can be loaded to Keras/tensorflow in R.

Author: Satoshi Kume [aut, cre] , Kozo Nishida [aut]

Maintainer: Satoshi Kume <satoshi.kume.1984 at gmail.com>

Citation (from within R, enter citation("BioImageDbs")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BioImageDbs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioImageDbs")

Providing Bioimage Dataset for ExperimentHub HTML R Script

The BioImageBbs Datasets HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellCulture, ExperimentData, ExperimentHub, Tissue

Version 1.12.0

License Artistic-2.0

Depends R (>= 4.1.0)

Imports ExperimentHub, AnnotationHub, markdown, rmarkdown, EBImage, magick, magrittr, filesstrings, animation, einsum

System Requirements

URL https://kumes.github.io/BioImageDbs/

Suggests knitr, BiocStyle, purrr

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BioImageDbs_1.12.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/BioImageDbs

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BioImageDbs

Package Short Url https://bioconductor.org/packages/BioImageDbs/

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