yamss

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see yamss.

Tools for high-throughput metabolomics

Bioconductor version: 3.19

Tools to analyze and visualize high-throughput metabolomics data aquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis. At the core of these methods is a peak detection phase that pools information across all samples simultaneously. This is in contrast to other methods that detect peaks in a sample-by-sample basis.

Author: Leslie Myint [cre, aut] , Kasper Daniel Hansen [aut]

Maintainer: Leslie Myint <leslie.myint at gmail.com>

Citation (from within R, enter citation("yamss")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("yamss")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("yamss")

yamss User's Guide HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews MassSpectrometry, Metabolomics, PeakDetection, Software

Version 1.30.0

In Bioconductor since BioC 3.4 (R-3.3) (8 years)

License Artistic-2.0

Depends R (>= 4.3.0), methods, BiocGenerics(>= 0.15.3), SummarizedExperiment

Imports IRanges, stats, S4Vectors, EBImage, Matrix, mzR, data.table, grDevices, limma

System Requirements

URL https://github.com/hansenlab/yamss

Bug Reports https://github.com/hansenlab/yamss/issues

Suggests BiocStyle, knitr, rmarkdown, digest, mtbls2, testthat

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package yamss_1.30.0.tar.gz

Windows Binary (x86_64) yamss_1.30.0.zip

macOS Binary (x86_64) yamss_1.30.0.tgz

macOS Binary (arm64) yamss_1.30.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/yamss

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/yamss

Bioc Package Browser https://code.bioconductor.org/browse/yamss/

Package Short Url https://bioconductor.org/packages/yamss/

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