sparseMatrixStats

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see sparseMatrixStats.

Summary Statistics for Rows and Columns of Sparse Matrices

Bioconductor version: 3.19

High performance functions for row and column operations on sparse matrices. For example: col / rowMeans2, col / rowMedians, col / rowVars etc. Currently, the optimizations are limited to data in the column sparse format. This package is inspired by the matrixStats package by Henrik Bengtsson.

Author: Constantin Ahlmann-Eltze [aut, cre]

Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>

Citation (from within R, enter citation("sparseMatrixStats")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("sparseMatrixStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sparseMatrixStats")

sparseMatrixStats HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataRepresentation, Infrastructure, Software

Version 1.16.0

In Bioconductor since BioC 3.11 (R-4.0) (4.5 years)

License MIT + file LICENSE

Depends MatrixGenerics(>= 1.5.3)

Imports Rcpp, Matrix, matrixStats (>= 0.60.0), methods

System Requirements C++11

URL https://github.com/const-ae/sparseMatrixStats

Bug Reports https://github.com/const-ae/sparseMatrixStats/issues

Suggests testthat (>= 2.1.0), knitr, bench, rmarkdown, BiocStyle

Linking To Rcpp

Enhances

Depends On Me

Imports Me DelayedMatrixStats, GSVA, SPOTlight, SimBu, atena, ccImpute, dreamlet, smartid, smoothclust, adjclust, CRMetrics, GrabSVG, mombf, scBSP

Suggests Me MatrixGenerics, scPCA, zinbwave, singleCellHaystack

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sparseMatrixStats_1.16.0.tar.gz

Windows Binary (x86_64) sparseMatrixStats_1.16.0.zip

macOS Binary (x86_64) sparseMatrixStats_1.16.0.tgz

macOS Binary (arm64) sparseMatrixStats_1.16.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/sparseMatrixStats

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sparseMatrixStats

Bioc Package Browser https://code.bioconductor.org/browse/sparseMatrixStats/

Package Short Url https://bioconductor.org/packages/sparseMatrixStats/

Package Downloads Report Download Stats