shiny.gosling

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see shiny.gosling.

A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny

Bioconductor version: 3.19

A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization. http://gosling-lang.org/. This R package is based on gosling.js. It uses R functions to create gosling plots that could be embedded onto R Shiny apps.

Author: Appsilon [aut, cre], Anirban Shaw [aut] , Federico Rivadeneira [aut]

Maintainer: Appsilon <opensource at appsilon.com>

Citation (from within R, enter citation("shiny.gosling")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("shiny.gosling")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("shiny.gosling")

1. Introduction to shiny.gosling HTML R Script

2. Using a GRanges object in shiny.gosling HTML R Script

3. Creating a Circos Plot with VCF Data HTML R Script

4. Creating an Interactive Line Chart with shiny.gosling HTML R Script

5. Creating a Multi-Scale Sequence Track HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Genetics, ShinyApps, Software, Visualization

Version 1.0.1

In Bioconductor since BioC 3.19 (R-4.4) (< 6 months)

License LGPL-3

Depends

Imports htmltools, jsonlite, rlang, shiny, shiny.react (== 0.3.0), fs, digest, rjson

System Requirements

URL

Suggests config, covr, knitr, lintr, mockery (>= 0.4.3), rcmdcheck, rmarkdown, sessioninfo, spelling, testthat (>= 3.0.0), GenomicRanges, VariantAnnotation, StructuralVariantAnnotation, biovizBase, ggbio

Linking To

Enhances

Depends On Me

Imports Me gINTomics

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package shiny.gosling_1.0.1.tar.gz

Windows Binary (x86_64) shiny.gosling_1.0.1.zip (64-bit only)

macOS Binary (x86_64) shiny.gosling_1.0.1.tgz

macOS Binary (arm64) shiny.gosling_1.0.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/shiny.gosling

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/shiny.gosling

Bioc Package Browser https://code.bioconductor.org/browse/shiny.gosling/

Package Short Url https://bioconductor.org/packages/shiny.gosling/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.19 Source Archive