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sangeranalyseR
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see sangeranalyseR.
sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R
Bioconductor version: 3.19
This package builds on sangerseqR to allow users to create contigs from collections of Sanger sequencing reads. It provides a wide range of options for a number of commonly-performed actions including read trimming, detecting secondary peaks, and detecting indels using a reference sequence. All parameters can be adjusted interactively either in R or in the associated Shiny applications. There is extensive online documentation, and the package can outputs detailed HTML reports, including chromatograms.
Author: Rob Lanfear <rob.lanfear at gmail.com>, Kuan-Hao Chao <ntueeb05howard at gmail.com>
Maintainer: Kuan-Hao Chao <ntueeb05howard at gmail.com>
citation("sangeranalyseR")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sangeranalyseR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sangeranalyseR")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.