rawrr

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see rawrr.

Direct Access to Orbitrap Data and Beyond

Bioconductor version: 3.19

This package wraps the functionality of the RawFileReader .NET assembly. Within the R environment, spectra and chromatograms are represented by S3 objects. The package provides basic functions to download and install the required third-party libraries. The package is developed, tested, and used at the Functional Genomics Center Zurich, Switzerland.

Author: Christian Panse [aut, cre] , Tobias Kockmann [aut]

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Citation (from within R, enter citation("rawrr")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("rawrr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rawrr")

Direct Access to Orbitrap Data and Beyond HTML R Script

Reference Manual PDF

NEWS Text

INSTALL Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software

Version 1.12.0

In Bioconductor since BioC 3.13 (R-4.1) (3.5 years)

License GPL-3

Depends R (>= 4.1)

Imports grDevices, graphics, stats, utils

System Requirements mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows.

URL https://github.com/fgcz/rawrr/

Bug Reports https://github.com/fgcz/rawrr/issues

Suggests BiocStyle(>= 2.5), ExperimentHub, knitr, protViz (>= 0.7), rmarkdown, tartare(>= 1.5), testthat

Linking To

Enhances

Depends On Me

Imports Me MsBackendRawFileReader, rawDiag

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rawrr_1.12.0.tar.gz

Windows Binary (x86_64) rawrr_1.12.0.zip

macOS Binary (x86_64) rawrr_1.12.0.tgz

macOS Binary (arm64) rawrr_1.12.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/rawrr

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rawrr

Bioc Package Browser https://code.bioconductor.org/browse/rawrr/

Package Short Url https://bioconductor.org/packages/rawrr/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.19 Source Archive