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panelcn.mops
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see panelcn.mops.
CNV detection tool for targeted NGS panel data
Bioconductor version: 3.19
CNV detection tool for targeted NGS panel data. Extension of the cn.mops package.
Author: Verena Haunschmid [aut], Gundula Povysil [aut, cre]
Maintainer: Gundula Povysil <povysil at bioinf.jku.at>
Citation (from within R, enter
citation("panelcn.mops")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("panelcn.mops")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("panelcn.mops")
Reference Manual
PDF
NEWS
Text
Details
biocViews
CellBiology, CopyNumberVariation, Genetics, GenomicVariation, Sequencing, Software, VariantDetection
Version
1.26.0
In Bioconductor since
BioC 3.6 (R-3.4) (7 years)
License
LGPL (>= 2.0)
Depends
R (>= 3.5.0), cn.mops, methods, utils, stats, graphics
System Requirements
See More
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
CopyNumberPlots
Links To Me
Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
panelcn.mops_1.26.0.tar.gz
Windows Binary (x86_64)
panelcn.mops_1.26.0.zip
macOS Binary (x86_64)
panelcn.mops_1.26.0.tgz
macOS Binary (arm64)
panelcn.mops_1.26.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/panelcn.mops
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/panelcn.mops
Bioc Package Browser
https://code.bioconductor.org/browse/panelcn.mops/
Package Short Url
https://bioconductor.org/packages/panelcn.mops/
Package Downloads Report
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