ncRNAtools

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see ncRNAtools.

An R toolkit for non-coding RNA

Bioconductor version: 3.19

ncRNAtools provides a set of basic tools for handling and analyzing non-coding RNAs. These include tools to access the RNAcentral database and to predict and visualize the secondary structure of non-coding RNAs. The package also provides tools to read, write and interconvert the file formats most commonly used for representing such secondary structures.

Author: Lara Selles Vidal [cre, aut] , Rafael Ayala [aut] , Guy-Bart Stan [aut] , Rodrigo Ledesma-Amaro [aut]

Maintainer: Lara Selles Vidal <lara.selles at oist.jp>

Citation (from within R, enter citation("ncRNAtools")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ncRNAtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ncRNAtools")

rfaRm HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, FunctionalGenomics, Software, StructuralPrediction, ThirdPartyClient, Visualization

Version 1.14.0

In Bioconductor since BioC 3.12 (R-4.0) (4 years)

License GPL-3

Depends

Imports httr, xml2, utils, methods, grDevices, ggplot2, IRanges, GenomicRanges, S4Vectors

System Requirements

URL

Bug Reports https://github.com/LaraSellesVidal/ncRNAtools/issues

Suggests knitr, BiocStyle, rmarkdown, RUnit, BiocGenerics

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ncRNAtools_1.14.0.tar.gz

Windows Binary (x86_64) ncRNAtools_1.14.0.zip (64-bit only)

macOS Binary (x86_64) ncRNAtools_1.14.0.tgz

macOS Binary (arm64) ncRNAtools_1.14.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ncRNAtools

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ncRNAtools

Bioc Package Browser https://code.bioconductor.org/browse/ncRNAtools/

Package Short Url https://bioconductor.org/packages/ncRNAtools/

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