m6Aboost

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see m6Aboost.

m6Aboost

Bioconductor version: 3.19

This package can help user to run the m6Aboost model on their own miCLIP2 data. The package includes functions to assign the read counts and get the features to run the m6Aboost model. The miCLIP2 data should be stored in a GRanges object. More details can be found in the vignette.

Author: You Zhou [aut, cre] , Kathi Zarnack [aut]

Maintainer: You Zhou <youzhoulearning at gmail.com>

Citation (from within R, enter citation("m6Aboost")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("m6Aboost")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("m6Aboost")

m6Aboost Vignettes HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Epigenetics, ExperimentHubSoftware, Genetics, Sequencing, Software

Version 1.10.0

In Bioconductor since BioC 3.14 (R-4.1) (3 years)

License Artistic-2.0

Depends S4Vectors, adabag, GenomicRanges, R (>= 4.1)

Imports dplyr, rtracklayer, BSgenome, Biostrings, utils, methods, IRanges, ExperimentHub

System Requirements

URL https://github.com/ZarnackGroup/m6Aboost

Bug Reports https://github.com/ZarnackGroup/m6Aboost/issues

Suggests knitr, rmarkdown, bookdown, testthat, BiocStyle, BSgenome.Mmusculus.UCSC.mm10

Linking To

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package m6Aboost_1.10.0.tar.gz

Windows Binary (x86_64) m6Aboost_1.10.0.zip

macOS Binary (x86_64) m6Aboost_1.10.0.tgz

macOS Binary (arm64) m6Aboost_1.10.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/m6Aboost

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/m6Aboost

Bioc Package Browser https://code.bioconductor.org/browse/m6Aboost/

Package Short Url https://bioconductor.org/packages/m6Aboost/

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