igvShiny

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see igvShiny.

igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)

Bioconductor version: 3.19

This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.

Author: Paul Shannon [aut], Arkadiusz Gladki [aut, cre] , Karolina Scigocka [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("igvShiny")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("igvShiny")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("igvShiny")

igvShiny Overview HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Version 1.0.5

In Bioconductor since BioC 3.19 (R-4.4) (< 6 months)

License MIT + file LICENSE

Depends R (>= 3.5.0), GenomicRanges, methods, shiny

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Follow Installation instructions to use this package in your R session.

Source Package igvShiny_1.0.5.tar.gz

Windows Binary (x86_64) igvShiny_1.0.5.zip (64-bit only)

macOS Binary (x86_64) igvShiny_1.0.5.tgz

macOS Binary (arm64) igvShiny_1.0.5.tgz

Source Repository git clone https://git.bioconductor.org/packages/igvShiny

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/igvShiny

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Old Source Packages for BioC 3.19 Source Archive